Shibo Li (栗识博)

Implicit Neural Representations (INRs) have emerged as a transformative paradigm in signal processing and computer vision, excelling in tasks from image reconstruction to 3D shape modeling. Yet their effectiveness is fundamentally limited by the absence of principled strategies for optimal configuration - spanning activation selection, initialization scales, layer-wise adaptation, and their intricate interdependencies. These choices dictate performance, stability, and generalization, but current practice relies on ad-hoc heuristics, brute-force grid searches, or task-specific tuning, often leading to inconsistent results across modalities. This work introduces OptiINR, the first unified framework that formulates INR configuration as a rigorous optimization problem. Leveraging Bayesian optimization, OptiINR efficiently explores the joint space of discrete activation families - such as sinusoidal (SIREN), wavelet-based (WIRE), and variable-periodic (FINER) - and their associated continuous initialization parameters. This systematic approach replaces fragmented manual tuning with a coherent, data-driven optimization process. By delivering globally optimal configurations, OptiINR establishes a principled foundation for INR design, consistently maximizing performance across diverse signal processing applications.

Physical simulations are essential tools across critical fields such as mechanical and aerospace engineering, chemistry, meteorology, etc. While neural operators, particularly the Fourier Neural Operator (FNO), have shown promise in predicting simulation results with impressive performance and efficiency, they face limitations when handling real-world scenarios involving coupled multi-physics outputs. Current neural operator methods either overlook the correlations between multiple physical processes or employ simplistic architectures that inadequately capture these relationships. To overcome these challenges, we introduce a novel coupled multi-physics neural operator learning (COMPOL) framework that extends the capabilities of Fourier operator layers to model interactions among multiple physical processes. Our approach implements feature aggregation through recurrent and attention mechanisms, enabling comprehensive modeling of coupled interactions. Our method’s core is an innovative system for aggregating latent features from multi-physics processes. These aggregated features serve as enriched information sources for neural operator layers, allowing our framework to capture complex physical relationships accurately. We evaluated our coupled multi-physics neural operator across diverse physical simulation tasks, including biological systems, fluid mechanics, and multiphase flow in porous media. Our proposed model demonstrates a two to three-fold improvement in predictive performance compared to existing approaches.

Graph Neural Networks (GNNs) have gained traction in Graph-based Machine Learning as a Service (GMLaaS) platforms, yet they remain vulnerable to graph-based model extraction attacks (MEAs), where adversaries reconstruct surrogate models by querying the victim model. Existing defense mechanisms, such as watermarking and fingerprinting, suffer from poor real-time performance, susceptibility to evasion, or reliance on post-attack verification, making them inadequate for handling the dynamic characteristics of graph-based MEA variants. To address these limitations, we propose ATOM, a novel real-time MEA detection framework tailored for GNNs. ATOM integrates sequential modeling and reinforcement learning to dynamically detect evolving attack patterns, while leveraging k-core embedding to capture the structural properties, enhancing detection precision. Furthermore, we provide theoretical analysis to characterize query behaviors and optimize detection strategies. Extensive experiments on multiple real-world datasets demonstrate that ATOM outperforms existing approaches in detection performance, maintaining stable across different time steps, thereby offering a more effective defense mechanism for GMLaaS environments. Our source code is available at https://github.com/LabRAI/ATOM.

Fourier Neural Operator (FNO) is a popular operator learning framework. It not only achieves the state-of-the-art performance in many tasks, but also is efficient in training and prediction. However, collecting training data for the FNO can be a costly bottleneck in practice, because it often demands expensive physical simulations. To overcome this problem, we propose Multi-Resolution Active learning of FNO (MRA-FNO), which can dynamically select the input functions and resolutions to lower the data cost as much as possible while optimizing the learning efficiency. Specifically, we propose a probabilistic multi-resolution FNO and use ensemble Monte-Carlo to develop an effective posterior inference algorithm. To conduct active learning, we maximize a utility-cost ratio as the acquisition function to acquire new examples and resolutions at each step. We use moment matching and the matrix determinant lemma to enable tractable, efficient utility computation. Furthermore, we develop a cost annealing framework to avoid over-penalizing high-resolution queries at the early stage. The over-penalization is severe when the cost difference is significant between the resolutions, which renders active learning often stuck at low-resolution queries and inferior performance. Our method overcomes this problem and applies to general multi-fidelity active learning and optimization problems. We have shown the advantage of our method in several benchmark operator learning tasks.

Model Agnostic Meta-Learning (MAML) is widely used to find a good initialization for a family of tasks. Despite its success, a critical challenge in MAML is to calculate the gradient w.r.t. the initialization of a long training trajectory for the sampled tasks, because the computation graph can rapidly explode and the computational cost is very expensive. To address this problem, we propose Adjoint MAML (A-MAML). We view gradient descent in the inner optimization as the evolution of an Ordinary Differential Equation (ODE). To efficiently compute the gradient of the validation loss w.r.t. the initialization, we use the adjoint method to construct a companion, backward ODE. To obtain the gradient w.r.t. the initialization, we only need to run the standard ODE solver twice — one is forward in time that evolves a long trajectory of gradient flow for the sampled task; the other is backward and solves the adjoint ODE. We need not create or expand any intermediate computational graphs, adopt aggressive approximations, or impose proximal regularizers in the training loss. Our approach is cheap, accurate, and adaptable to different trajectory lengths. We demonstrate the advantage of our approach in both synthetic and real-world meta-learning tasks.

Multi-fidelity modeling and learning is important in physical simulation related applications. It can leverage both low-fidelity and high-fidelity examples for training so as to reduce the cost of data generation yet still achieving good performance. While existing approaches only model finite, discrete fidelities, in practice, the feasible fidelity choice is often infinite, which can correspond to a continuous mesh spacing or finite element length. In this paper, we propose Infinite Fidelity Coregionalization (IFC). Given the data, our method can extract and exploit rich information within infinite, continuous fidelities to bolster the prediction accuracy. Our model can interpolate and/or extrapolate the predictions to novel fidelities that are not covered by the training data. Specifically, we introduce a low-dimensional latent output as a continuous function of the fidelity and input, and multiple it with a basis matrix to predict high-dimensional solution outputs. We model the latent output as a neural Ordinary Differential Equation (ODE) to capture the complex relationships within and integrate information throughout the continuous fidelities. We then use Gaussian processes or another ODE to estimate the fidelity-varying bases. For efficient inference, we reorganize the bases as a tensor, and use a tensor-Gaussian variational posterior approximation to develop a scalable inference algorithm for massive outputs. We show the advantage of our method in several benchmark tasks in computational physics.

Many applications, such as in physical simulation and engineering design, demand we estimate functions with high-dimensional outputs. To reduce the expensive cost of generating training examples, we usually choose several fidelities to enable a cost/quality trade-off. In this paper, we consider the active learning task to automatically identify the fidelities and training inputs to query new examples so as to achieve the best learning benefit-cost ratio. To this end, we propose DMFAL, a Deep Multi-Fidelity Active Learning approach. We first develop a deep neural network-based multi-fidelity model for high-dimensional outputs, which can flexibly capture strong complex correlations across the outputs and fidelities to enhance the learning of the target function. We then propose a mutual information based acquisition function that extends the predictive entropy principle. To overcome the computational challenges caused by large output dimensions, we use the multi-variate delta method and moment-matching to estimate the output posterior, and Weinstein-Aronszajn identity to calculate and optimize the acquisition function. We show the advantage of our method in several applications of computational physics and engineering design.

Bayesian optimization (BO) is a popular framework to optimize black-box functions. In many applications, the objective function can be evaluated at multiple fidelities to enable a trade-off between the cost and accuracy. To reduce the optimization cost, many multi-fidelity BO methods have been proposed. Despite their success, these methods either ignore or over-simplify the strong, complex correlations across the fidelities, and hence can be inefficient in estimating the objective function. To address this issue, we propose Deep Neural Network Multi-Fidelity Bayesian Optimization (DNN-MFBO) that can flexibly capture all kinds of complicated relationships between the fidelities to improve the objective function estimation and hence the optimization performance. We use sequential, fidelity-wise Gauss-Hermite quadrature and moment-matching to fulfill a mutual information-based acquisition function, which is computationally tractable and efficient. We show the advantages of our method in both synthetic benchmark datasets and real-world applications in engineering design.